Marisa Leal, Sarah Fickel, Armbien Sabillo, Julio Ramirez, Hernando Vergara, Ceazar Nave, Daniel Saw, Carmen Domingo, "The Role of Sdf-1α signaling in Xenopus laevis somite morphogenesis." Developmental Dynamics, 2014.
Hernando Martinez, "Descriptive and functional approaches for a system-level understanding of Platynereis dumerilii and the evolution of locomotor circuits in Bilateria." Heidelberg University Library, 2016.
Hernando Vergara, Paola Bertucci, Peter Hantz, Maria Tosches, Kaia Achim, Pavel Vopalensky, Detlev Arendt, "Whole-organism cellular gene-expression atlas reveals conserved cell types in the ventral nerve cord of Platynereis dumerilii." Proceedings of the National Academy of Sciences of the United States of America, 2017.
Kaia Achim, Hernando Vergara, Jean-Baptiste Pettit, "Spatial Transcriptomics: Constructing a Single-Cell Resolution Transcriptome-Wide Expression Atlas." RNA Detection: Methods and Protocols, 2018.
Kaia Achim, Nils Eling, Hernando Vergara, Paola Bertucci, Jacob Musser, Pavel Vopalensky, Thibaut Brunet, Paul Collier, Vladimir Benes, John Marioni, Detlev Arendt, "Whole-Body Single-Cell Sequencing Reveals Transcriptional Domains in the Annelid Larval Body." Molecular Biology and Evolution, 2018.
Hernando Vergara, Julio Ramirez, Trista Rosing, Ceazar Nave, Rebecca Blandino, Daniel Saw, Parag Saraf, Gabriel Piexoto, Coohleen Coombes, Melissa Adams, Carmen Domingo, "miR-206 is required for changes in cell adhesion that drive muscle cell morphogenesis in Xenopus laevis." Developmental Biology, 2018.
Hernando Vergara, Constantin Pape, Kimberly Meechan, Valentyna Zinchenko, Christel Genoud, Adrian Wanner, Kevin Mutemi, Benjamin Titze, Rachel Templin, Paola Bertucci, Oleg Simakov, Wiebke Dürichen, Pedro Machado, Emily Savage, Lothar Schermelleh, Yannick Schwab, Rainer Friedrich, Anna Kreshuk, Christian Tischer, Detlev Arendt, "Whole-body integration of gene expression and single-cell morphology." Cell, 2021.
The Laboratory, Valeria Aguillon-Rodriguez, Dora Angelaki, Hannah Bayer, Niccolo Bonacchi, Matteo Carandini, Fanny Cazettes, Gaelle Chapuis, Anne Churchland, Yang Dan, Eric Dewitt, Mayo Faulkner, Hamish Forrest, Laura Haetzel, Michael Häusser, Sonja Hofer, Fei Hu, Anup Khanal, Christopher Krasniak, Ines Laranjeira, Zachary Mainen, Guido Meijer, Nathaniel Miska, Thomas Mrsic-Flogel, Masayoshi Murakami, Jean-Paul Noel, Alejandro Pan-Vazquez, Cyrille Rossant, Joshua Sanders, Karolina Socha, Rebecca Terry, Anne Urai, Hernando Vergara, Miles Wells, Christian Wilson, Ilana Witten, Lauren Wool, Anthony Zador, "Standardized and reproducible measurement of decision-making in mice." eLife, 2021.
B. Özpolat, Nadine Randel, Elizabeth Williams, Luis Bezares-Calderon, Gabriele Andreatta, Guillaume Balavoine, Paola Bertucci, David Ferrier, Maria Gambi, Eve Gazave, Mette Handberg-Thorsager, Jörg Hardege, Cameron Hird, Yu-Wen Hsieh, Jerome Hui, Kevin Mutemi, Stephan Schneider, Oleg Simakov, Hernando Vergara, Michel Vervoort, Gaspar Jekely, Kristin Tessmar-Raible, Florian Raible, Detlev Arendt, "The Nereid on the rise: Platynereis as a model system." EvoDevo, 2021.
Detlev Arendt, Idoia Urzainqui, Hernando Vergara, "The conserved core of the nereid brain: Circular CNS, apical nervous system and lhx6-arx-dlx neurons." Current Opinion in Neurobiology, 2021.
Constantin Pape, Kimberly Meechan, Ekaterina Moreva, Martin Schorb, Nicolas Chiaruttini, Valentyna Zinchenko, Hernando Vergara, Giulia Mizzon, Josh Moore, Detlev Arendt, Anna Kreshuk, Yannick Schwab, Christian Tischer, "MoBIE: a Fiji plugin for sharing and exploration of multi-modal cloud-hosted big image data." Nature Methods, 2023.
Oel Phillip, Cros Cyril, Pan Leslie, Buglakova Elena, Haury Samuel, Santangeli Luca, Gerber Tobias, Papalopoulos Nikolaos, Vergara Martinez, Puga David, Disela Vanessa, Niederhaus Lara, Bertucci Yanina, Witte Victoria, Bilgesu Asli, Quintana Idoia, Acevedo Maria, Musser Jacob, Kreshuk Anna, Arendt Detlev, "A whole-body cell type atlas mapped into an electron microscopy volume of an annelid worm." bioRxiv, 2025.
Francesca Greenstreet, Hernando Vergara, Yvonne Johansson, Sthitapranjya Pati, Laura Schwarz, Stephen Lenzi, Jesse Geerts, Matthew Wisdom, Alina Gubanova, Lars Rollik, Jasvin Kaur, Theodore Moskovitz, Joseph Cohen, Emmett Thompson, Troy Margrie, Claudia Clopath, Marcus Stephenson-Jones, "Dopaminergic action prediction errors serve as a value-free teaching signal." Nature, 2025.
Senthilkumar Deivasigamani, Shareefa Thekkan, Hernando Vergara, Owen Conolly, Mali Cosden, Thienlong Phan, Sean Smith, Jacob Marcus, Jason Uslaner, Dhivya Venkat, Robert Drolet, Yamuna Krishnan, Souvik Modi, "Multimodal Blood-Based Biomarker Panel Reveals Altered Lysosomal Ionic Content in Alzheimer’s Disease." ACS Chemical Biology, 2025.
Balma Serrano-Porcar, Rafael Marin, Javier Rodriguez, Caterina Barezzi, Harshkumar Vasoya, Donna Kean, Duncan Pottinger, Alex Taylor, Hernando Vergara, Jaime Rocha, "The Training Village: an open platform for continuous testing of rodents in cognitive tasks." bioRxiv, 2026.
Talk at UC San Francisco, Department of Testing, San Francisco, California
Tutorial at UC-Berkeley Institute for Testing Science, Berkeley CA, USA
Talk at London School of Testing, London, UK
Conference proceedings talk at Testing Institute of America 2014 Annual Conference, Los Angeles, CA
</ul> –>